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Query name(s): DUF3871-214
Input File Name: None
Database: bacterial
Input type: query
E-value: 0.01
Number of iterations: 4
Length threshold: 0.20
Number of flanking genes: 15
PID threshold: 0.30
Label File Name: None
Label Database: None
Email: squama620@gmail.com
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Error running extract_clinker_plot_data.py
Job failed
[ 05:11:29 ] Generating phylogeny distribution plots and genomic neighbourhood visualizations for genomic neighbourhood clusters in '1017_1Py_DUF3871-214_above_PID_threshold_in_size'. (140/287)
[ 02:44:06 ] Clustering genomic neighbourhoods in 1017_1Py_DUF3871-214/1017_1Py_DUF3871-214_above_PID_threshold/1017_1Py_DUF3871-214_above_PID_threshold_in_size
[ 02:44:01 ] Generating Krona phylogeny distribution plot for 1017_1Py_DUF3871-214/1017_1Py_DUF3871-214_above_PID_threshold/1017_1Py_DUF3871-214_above_PID_threshold_in_size.
[ 02:44:01 ] Filtering genomic neighbourhoods in 1017_1Py_DUF3871-214/1017_1Py_DUF3871-214_above_PID_threshold with length threshold.
[ 02:43:56 ] Generating Krona phylogeny distribution plot for 1017_1Py_DUF3871-214/1017_1Py_DUF3871-214_above_PID_threshold.
[ 02:43:56 ] Filtering genomic neighbourhoods with percent identity threshold.
[ 02:43:56 ] Generating phylogeny distribution plots and genomic neighbourhood visualizations for all non-redundant genomic neighbourhood clusters in '1017_1Py_DUF3871-214'. (302/302)
[ 22:38:56 ] Clustering non-redundant genomic neighbourhoods.
[ 22:38:03 ] Visualizing phylogenetic data for the non-redundant genomic neighbourhoods.
[ 22:24:54 ] Extracting all protein accessions from non-redundant GenBank files.
[ 22:24:05 ] Filtering GNs for 1017_1Py_DUF3871-214 and generating phylogeny data.
[ 21:56:57 ] Creating GNs for 1017_1Py_DUF3871-214.parsed
[ 21:56:57 ] Parsing PSI-BLAST output...
[ 21:56:57 ] Using 1017_1Py.label as match gene labelling file.
[ 21:56:57 ] Time to run PSI-BLASTs: 46633 s
[ 21:56:57 ] PSI-BLASTs finished: Oct 20 21:56:57
[ 08:59:44 ] Running PSI-BLASTs
[ 08:59:44 ] Query file: 1017_1Py.fasta
[ 08:59:44 ] Start: Oct 20 08:59:44
[ 08:59:44 ] Starting...
[ 00:06:13 ] Job received!