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Input Type:
Or choose a file to upload:
Optional Parameters:
Search:
Database: Viral Bacterial Combined Viral Bacterial Fungal GTDB Bacterial GTDB Archaeal GTDB Full Acinetobacter Bacillus Bacteroidales Campylobacter Candidatus Clostridia Clostridioides Enterobacter Enterococcus Escherichia Klebsiella Lachnospiraceae Listeria Mycobacterium Pseudomonas Salmonella Shigella Staphylococcus Streptococcus Vibrio
PSI-BLAST:
E-value:
Number of iterations:
Output Sorting:
Group output into folders based on a
PID threshold of:
Length threshold of:
Clinker & Clustermap.js:
Number of flanking genes:
Dynamic Labeling:
Label file:
Select provided label database: None> Bacterial Defense Systems (not exhaustive) Anti-CRISPR Proteins (not exhaustive) All
Cannot submit with both input text and input file
Drag and drop GenBank (.gb, .gbk or .gbff) files here, or click to select files.
Select provided label database (optional): None> Bacterial Defense Systems (not exhaustive) Anti-CRISPR Proteins (not exhaustive) All
Warning: Plotting more than 30 files is not recommended. For every file uploaded, both the time to generate the plot, and the size of the visualization file will increase exponentially. As the file size increases, ability to open and interact with the visualization will be impaired.
Cannot plot more than 50 GenBank files.
Uploaded files (0):
Merge Label Files
Drag and drop label files (.csv, .label) here, or click to select files.
Warning: Plotting more than 10 files is not recommended due to memory constraints. GNAT will only process uploads of less than 5 GiB.
Adjust Genomic Neighbourhood Width
Drag and drop a GenBank file, or click to select a file.
Once a GN is plotted, you may drag and adjust the width of the GN below. When satisfied, click the "Save" button to download an updated trimmed GenBank file.
